Find endogenous repeats within a longer sequence

(This software is under development.)

This form finds all sub-sequences (of a user-specified length) within a sequence to be searched. It returns a list of all sub-sequences that occur more than once, along with their positions within the larger sequence. (The minimum sub-sequence length is 6 characters.)

Repeating sequences are also listed with respect to the number of times they occured. For example, 

     2 unique sequence(s) occured 2 time(s): aabbcc bbccdd

Enter a sequence to be searched (current maximum length is 80,000 elements):

(If you don't have a sequence but know a gene name or UID, you could visit
"Get NCBI sequences for genes or specified regions".)

Specify the length of sequences to search for:

Data will be displayed on a web page unless you choose to have it downloaded. Do you want to have it downloaded?

   

This software is under development. Please report problems and direct inquiries to Michael Grobe of the Biomedical Applications group within UITS at Indiana Unviersity via dgrobe @ iupui.edu.